More info:
I'll number the molex with the ground in upper left corner. So, like this:
1 2 3
4 5 6
7 8 9
10 11 12
Molex pinout:
1-Ground
2-Black wire from center of joystick (out of the little metal tube)
3-Empty
4-Empty
5-Pin 1 from joystick pcb connector @ J1
6-Pin 2 from joystick pcb connector @ J1
7-Left leg of "X"/Horizontal gear (when legs oriented downward)
8-White wire from center of joystick (out of the little metal tube)
9-Red wire from center of joystick (out of the little metal tube)
10-Right leg of "Y"/Vertical gear (when legs oriented downward)
11-Right leg of "X"/Horizontal gear (when legs oriented downward)
12-Left leg of "Y"/Vertical gear (when legs oriented downward)
Joystick pcb connector @ J1:
pin
(for pins 1 and 2, see pins 5 and 6 above)
3-Middle leg of "X"/Horizontal gear
4-Middle leg of "Y"/Vertical gear
5-KEY
6-Left leg of "Y"/Vertical gear
7-Right leg of "Y"/Vertical gear
*Note that both the left and right legs of the "Y"/Vertical gear have wires going to them AND off of them to the molex. The middle leg of the "Y"/Vertical gear, and all 3 legs of the "X"/Horizontal gear only have 1 wire going to them.